DreEX6028912 @ danRer10
Exon Skipping
Gene
ENSDARG00000004880 | acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:ZFIN;Acc:ZDB-GENE-080220-22]
Coordinates
chr2:44877892-44880319:-
Coord C1 exon
chr2:44880239-44880319
Coord A exon
chr2:44879930-44880031
Coord C2 exon
chr2:44877892-44878019
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTGGACTGTTCTGGTTTAAGGTG
3' ss Score
6.62
5' ss Seq
ACGGTACAT
5' ss Score
6.53
Exon sequences
Seq C1 exon
GTTTTAATAGCGGGCACATTCAAAGGCATGAAGATCAAACCAGGATCTTTTGGAAAAGCATCACCAGGATATGACGTGCAG
Seq A exon
GTGGTGGATGAAAATGGCTCTGTTGTGCCAAAAGGACAAGAGGGAGACCTCGGCATCCGAGTGAAACCAGAGAGACCCTTCTCTCTTTTTACAGAGTATACG
Seq C2 exon
GGGGAGCCAGTGCGCACAGCAGAATGTTTCCGTGGCGATTTCTACCTGACAGGTGACCGGGGAATGATGGACGATGAAGGATATTTGTGGTTCATCGGCAGATCTGATGACGTCATCTTGTCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004880-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.088 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(8.0=100)
C2:
PF0050123=AMP-binding=PD(9.9=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCGGGCACATTCAAAGGC
R:
CCTGCAGACAAGATGACGTCA
Band lengths:
203-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]