MmuEX0003599 @ mm9
Exon Skipping
Gene
ENSMUSG00000030935 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:MGI Symbol;Acc:MGI:99538]
Coordinates
chr7:126921893-126924391:+
Coord C1 exon
chr7:126921893-126921973
Coord A exon
chr7:126923117-126923218
Coord C2 exon
chr7:126924264-126924391
Length
102 bp
Sequences
Splice sites
3' ss Seq
ACTGACGTGCTCTATTCTAGATT
3' ss Score
8.99
5' ss Seq
GTAGTAAGA
5' ss Score
3.51
Exon sequences
Seq C1 exon
GTGCTGATCTGTGGAAATTTCAAGGGGATGAAAATTAAGCCCGGCTCAATGGGAAAGCCTTCTCCTGCTTTTGATGTGAAG
Seq A exon
ATTTTAGATGAAAATGGTGCCACTCTTCCTCCTGGACAAGAAGGGGATATTGCTCTTCAAGTTCTTCCTGAGCGACCATTTGGCCTTTTTACTCATTATGTA
Seq C2 exon
GATAATCCTTCCAAAACGGCTTCAACTCTACGAGGGAGTTTCTACATTACTGGGGACAGAGGATATATGGATGAAGATGGCTATTTCTGGTTTGTTGCAAGATCAGATGATATCATATTATCTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030935-'11-16,'11-14,13-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.088 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(8.0=100)
C2:
PF0050123=AMP-binding=PD(9.9=95.3),PF148391=DOR=PU(23.1=93.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGATCTGTGGAAATTTCAAGG
R:
ATATCATCTGATCTTGCAACAAACCA
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: