GgaEX1006065 @ galGal4
Exon Skipping
Gene
ENSGALG00000002200 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr14:14919387-14921086:+
Coord C1 exon
chr14:14919387-14919467
Coord A exon
chr14:14920132-14920233
Coord C2 exon
chr14:14920959-14921086
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTGCTTATTTTTAGATT
3' ss Score
10.35
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
Exon sequences
Seq C1 exon
GTGCTTGTCTGTGGAAATTTTAAAGGAATGGAAATTAAACCTGGCTCTATGGGAAAGCCATCACCAGGGTATGATGTCAAG
Seq A exon
ATTATAGATGAAAACGGTAATATTCTGCCTCCTGGAAAAGAAGGAGAGATTGCCATCAAAGTAAAACCTACAAGACCACTTTTCCTCTTTACTTGCTATACT
Seq C2 exon
GATGATCCAGAGAAAACAAAGGCAACAGTCCGTGGGGATTTCTATGTTACTGGAGACAGGGGGCTCATGGATGAAGATGGATACTTCTGGTTTGTTGGAAGAGCTGATGATGTCATTAATTCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200-'10-14,'10-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.2=100)
A:
PF0050123=AMP-binding=FE(7.9=100)
C2:
PF0050123=AMP-binding=PD(9.9=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGTCTGTGGAAATTTTAAAGGA
R:
CCAGCAGAATTAATGACATCATCAGC
Band lengths:
208-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]