BtaEX6108980 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006447 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr25:18642911-18653036:+
Coord C1 exon
chr25:18642911-18642991
Coord A exon
chr25:18651796-18651897
Coord C2 exon
chr25:18652909-18653036
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATTACTCTGTTTCATCCTAGATT
3' ss Score
8.28
5' ss Seq
ATAGTAAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GTACTAATCTGTGGAAATTTTAAGGGAATGAAAATTAAGCCTGGCTCAATGGGAAAACCTTCTCCTGCTTTTGATGTTAAG
Seq A exon
ATTTTAGATGTAAATGGCAACGTTCTACCACCTGGAAAAGAAGGCGATATTGGCATTCGAGTTCGACCTAACCGACCACTTGGCCTTTTTACCCATTATATA
Seq C2 exon
GATAATCCTACAAAAACAGCTTCAACTCTACGAGGCAATTTCTATATCACTGGGGACAGAGGCTATATGGATGAGGATGGATATTTCTGGTTTGTTTCAAGAGCAGATGATATCATATTATCTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006447-'9-14,'9-13,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.023
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(8.0=100)
C2:
PF0050123=AMP-binding=PD(9.9=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGGAAATTTTAAGGGAATGAA
R:
CCGGAAGATAATATGATATCATCTGC
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]