RnoEX0006229 @ rn6
Exon Skipping
Gene
ENSRNOG00000032246 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:RGD Symbol;Acc:62086]
Coordinates
chr1:189531997-189534516:+
Coord C1 exon
chr1:189531997-189532077
Coord A exon
chr1:189533280-189533378
Coord C2 exon
chr1:189534389-189534516
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATTGACATGTTTTATTCTAGATT
3' ss Score
7.41
5' ss Seq
TATGTAGTA
5' ss Score
-10.34
Exon sequences
Seq C1 exon
GTGCTGATCTGTGGAAATTTCAAGGGGATGAAAATTAAGCCTGGCTCAATGGGGAAGCCCTCTCCTGCTTTTAATGTGGAG
Seq A exon
ATTTTAGATGAAAATGGCACTATTCTTCCTCCTGGACAAGAAGGGGATATTGCTGTTCAAGTTCTTCCTGATCGACCATTTGGCCTTTTTACTCATTAT
Seq C2 exon
GATAATCCTTCGAAAACAGCTTCAACTCTACGAGGGAATTTCTACATCACTGGGGACAGAGGCTATATGGATGAGGATGGCTATTTCTGGTTTGTTGCAAGATCAGACGATGTCATATTATCCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032246-'13-19,'13-18,14-19
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(8.0=100)
C2:
PF0050123=AMP-binding=PD(9.9=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGATGAAAATTAAGCCTGGC
R:
TCGTCTGATCTTGCAACAAACCA
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]