HsaEX6042616 @ hg19
Exon Skipping
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:10522]
Coordinates
chr16:20797400-20803451:+
Coord C1 exon
chr16:20797400-20797480
Coord A exon
chr16:20801909-20802010
Coord C2 exon
chr16:20803324-20803451
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATTGTTCTATTTTATCCTAGATT
3' ss Score
7.73
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
GTGCTAATCTGTGGAAATTTTAAGGGAATGAAAATTAAACCTGGCTCAATGGGAAAACCTTCTCCTGCTTTCGATGTTAAG
Seq A exon
ATTGTAGATGTAAATGGCAATGTTCTACCTCCTGGACAAGAAGGAGATATTGGCATTCAAGTTCTACCCAACCGACCATTTGGCCTTTTTACTCATTACGTA
Seq C2 exon
GATAATCCTTCAAAAACAGCTTCAACTCTACGAGGCAATTTCTATATCACTGGGGACAGAGGATATATGGATAAAGATGGGTATTTCTGGTTTGTTGCAAGAGCAGATGATGTCATATTATCCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187-'11-14,'11-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(11.1=67.2)
A:
PF0050123=AMP-binding=FE(40.5=100),PF131931=AMP-binding_C=PU(11.3=20.0)
C2:
PF0050123=AMP-binding=PD(9.9=95.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTAATCTGTGGAAATTTTAAGGG
R:
ATAATATGACATCATCTGCTCTTGCA
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)