BtaEX6108973 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046098 | ACSM4
Description
acyl-CoA synthetase medium-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:32016]
Coordinates
chr25:18541886-18550962:+
Coord C1 exon
chr25:18541886-18542096
Coord A exon
chr25:18545223-18545430
Coord C2 exon
chr25:18550819-18550962
Length
208 bp
Sequences
Splice sites
3' ss Seq
GAGGCCTGTCTCTTTCCCAGGGC
3' ss Score
7.78
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
ACAGGAGAGAGACCAGCCAACCCAGCCCTGTGGTGGGTGAATGGCAAAGGGGATGAGGTGAAATGGAGCTTTGGAGAACTGGGCTCCTTGTCCCGAAAGGCTGCCAATGTGCTCACCAAGCCCTGTGGTTTAGAGAGAGGAGACCGAGTGGCCGTGATTCTTCCCCGAATCCCAGAGTGGTGGCTTATAAACGTGGCTTGTATGAGAACAG
Seq A exon
GGCTTGTCTTCATGCCAGGAACAACCCAGCTGACAGCAAAAGACATCCTCTATCGGCTGCATGCATCTAAGGCCAAGTGCATCGTGGCCAGTGAGGAGGTGATCCCAGCAGTGGAGTCCATTGTGTCCGAGTGTCCAGACTTGAAGACCAAACTCCTGGTGTCTCCACACAGCCAGGATGGGTGGCTCAGCTTCCCAGAGTTATTTCA
Seq C2 exon
AACTGCCTCTGCAGAGCACAGTTGTGTGGAGACAGGAAGTCAAGAACCAATGGCGATTTATTTCACCAGTGGGACCACAGGCTCTCCCAAGATGGCCCAACACTCTCAGAGCAGCCTGGGAATTGGGTATACCCTCTGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046098-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.9=100)
A:
PF0050123=AMP-binding=FE(16.6=100)
C2:
PF0050123=AMP-binding=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTGGGTGAATGGCAAAG
R:
CAATTCCCAGGCTGCTCTGAG
Band lengths:
308-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]