GgaEX1003818 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15227642-15228994:-
Coord C1 exon
chr14:15228784-15228994
Coord A exon
chr14:15228169-15228376
Coord C2 exon
chr14:15227642-15227778
Length
208 bp
Sequences
Splice sites
3' ss Seq
TAACCATATTGCTCTTCCAGGAA
3' ss Score
9.56
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GCTGGAAAAAGACCAACAAACTCTGCTTTTTGGTGGATAAGTGGAAATGGAGAAGAAGTAAAGTGGAGCTTTGAGGAGCTGGGATTCCTTTCTCGGAAAGTAGCCAACGTGTTGACCAAAGTGTGTGGACTGCAAAAAGGGGACAGAGTCATTCTGGTCCTGCCGCGAATCCCGGAATGGTGGCTGGTGAACGTGGCTTGCATTCGAGCAG
Seq A exon
GAATTGTCTTAATTCCAGGAACATCCCAATTATCAGCCAAAGACATATTATATCGACTCCAGGCTTCGAAGGCCAAGTGCATCATTACCAACGACACTCTGGCTCCTGCAGTAGACTCAGTGGCATCTGAGTGCCAGTTTCTTAAAAACAAGCTGATGGTGTCCAAAGGCAGTAGGGAGGGATGGCTGAACTTCAATGAACTGTACAA
Seq C2 exon
AAACCAGCCTGCTGACCATTCCTGCGTCAAAACAATGATTCAAGATTCAATGATTATCTTCTTTACCAGTGGAACCACGGGTTCTCCAAAGATGACCGAACATTCCCAGGGCAGCCTTGGTTTTAGACCCCTGTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.7=100)
A:
PF0050123=AMP-binding=FE(16.5=100)
C2:
PF0050123=AMP-binding=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACTCTGCTTTTTGGTGGA
R:
CGGTCATCTTTGGAGAACCCG
Band lengths:
294-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]