BtaEX6108983 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006447 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr25:18638976-18641552:+
Coord C1 exon
chr25:18638976-18639132
Coord A exon
chr25:18639618-18639697
Coord C2 exon
chr25:18641429-18641552
Length
80 bp
Sequences
Splice sites
3' ss Seq
CCACTTCTTCTAAATTGCAGACA
3' ss Score
7.8
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTTCTGGCTGGATTTGACCCCTTTGGATGTCATGTGGAATACCTCTGACACAGGCTGGGCAAAATCTGCATGGAGTAGTGTTTTTTCTCCGTGGATCCAGGGAGCATGTGTATTTGCACATTATTTGCCGCGGTTTGAGCCAACTTCCATCTTGCAA
Seq A exon
ACACTTTCCAAGTTTCCCATCACAGTCTTCTGTTCAGCACCAACTGCATACAGAATGCTTGTACAGAATGATAAGGCCAG
Seq C2 exon
CTATAAGTTCAAGAGCTTGAAGCACTGTGTAAGTGCTGGGGAACCAATCAACCCTGAAGTGACTGAACAATGGAGAAACAGGACAGGTCTGGATATCTACGAAGGATATGGACAGACTGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006447-'6-11,'6-8,7-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.6=100)
A:
PF0050123=AMP-binding=FE(6.3=100)
C2:
PF0050123=AMP-binding=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACAGGCTGGGCAAAATCT
R:
CAGGGTTGATTGGTTCCCCAG
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]