MmuEX6013611 @ mm9
Exon Skipping
Gene
ENSMUSG00000030935 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:MGI Symbol;Acc:MGI:99538]
Coordinates
chr7:126918605-126920690:+
Coord C1 exon
chr7:126918605-126918761
Coord A exon
chr7:126918997-126919076
Coord C2 exon
chr7:126920567-126920690
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTTTTCCAACTGCAGACC
3' ss Score
9.59
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTTCTGGCTGGATTTGATAGCCTCCGATGTGATGTGGAATACTTCAGATACAGGCTGGGCAAAGTCTGCATGGAGTAGTGTTTTTTCTCCATGGACCCAAGGAGCATGTGTTTTTGCACACTATTTGCCCCGTTTTGAATCAACTTCCATCTTGCAA
Seq A exon
ACCCTCTCCAAGTTCCCCATCACTGTCTTCTGTTCTGCACCAACTGCCTACCGGATGCTTGTTCAGAATGACATGAGCAG
Seq C2 exon
CTATAAGTTCAACAGTTTGAAGCACTGTGTCAGTGCTGGAGAACCTATTAACCCTGAAGTGATGGAACAATGGAGAAAGAAGACGGGCCTAGACATCTATGAAGGATATGGACAGACAGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030935-'8-12,'8-10,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.6=100)
A:
PF0050123=AMP-binding=FE(6.3=100)
C2:
PF0050123=AMP-binding=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCGATGTGATGTGGAAT
R:
GGTTCTCCAGCACTGACACAG
Band lengths:
183-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: