BtaEX6108986 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006448 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr25:18667881-18668854:-
Coord C1 exon
chr25:18668787-18668854
Coord A exon
chr25:18668627-18668706
Coord C2 exon
chr25:18667881-18668012
Length
80 bp
Sequences
Splice sites
3' ss Seq
GACACTCTGATGTTTTGCAGAGC
3' ss Score
8.01
5' ss Seq
GAAATAAGT
5' ss Score
1.63
Exon sequences
Seq C1 exon
GCAGCTTGGATTAATTAGGAGAAAATCAATTCCACCAGCAAATGGAAACCTAGGAAGAAGCAAATCTA
Seq A exon
AGCAGTTGTTTGACTACTTAATCATCATTGATTTTGAGTCAACATGTTGGAATGATGGGAAACGCCACCGGAGTCAGGAA
Seq C2 exon
GTAGTTGAATTTCCAGCTGTATTACTGAACACATCAACTGGAGAGATTGAATCTGAGTTCCATGCTTATGTTCAGCCTCAGGAACATCCAATTCTTTCTGAATTTTGCGTGGAACTGACAGGCATAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006448-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0092919=RNase_T=PU(10.1=70.4)
C2:
PF0092919=RNase_T=FE(22.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAAAATCAATTCCACCAGCA
R:
TTATGCCTGTCAGTTCCACGC
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]