BtaEX6109015 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:19146489-19150662:-
Coord C1 exon
chr25:19150594-19150662
Coord A exon
chr25:19149424-19149560
Coord C2 exon
chr25:19146489-19146594
Length
137 bp
Sequences
Splice sites
3' ss Seq
AAGTGGTTTCTACTCTTTAGGTG
3' ss Score
6.41
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TCATGCTGCCCTAAACCATTTCATTCATATCTTTGCTTTCAAACACTGTCTATAGTATGGCTACAGCAG
Seq A exon
GTGGAATCTATCCTGTTCCCAGAGTTGAAAGGATATAATCTGATACTTGGAACTGTTAATGCTGATGAAAAACTGGTTTCTGACTTTGTGGATCAAACTTTCGAGGTATTTCAGAAAAATCAAGTTGGTCCCTGCAA
Seq C2 exon
ATACTTAAATGTATACAAAAAGTATGATGACTTATTGGATAACACGGCAGAACAAAACATCAGTGAATTCCTGAAAGAAAATCATGAAATCGAGGATTTTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'11-12,'11-11,12-12=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF115273=ARL2_Bind_BART=PU(28.4=50.0)
C2:
PF115273=ARL2_Bind_BART=FE(43.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGCTGCCCTAAACCATTTCA
R:
CATCACAAAATCCTCGATTTCATGA
Band lengths:
175-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]