HsaEX6042645 @ hg19
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:21123314-21133445:-
Coord C1 exon
chr16:21133266-21133445
Coord A exon
chr16:21128524-21128660
Coord C2 exon
chr16:21123314-21123419
Length
137 bp
Sequences
Splice sites
3' ss Seq
AAGTGGTGTTTACTCTTCAGGTG
3' ss Score
6.71
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GATGGGAATGATTTTAAGGAGCCCTACCAAGAGATGAAGTTTTTCATACCTCAGCTAATCATGATCAAACTTGAAGTCAGTGAACCCATTATTGTCTTCAATCCATCTTTTGATGGCTGCTGGGAATTAATACGTGACTCTTTCCTGGAAATTATTAAGAACTCTAATGGGATCCCCAAG
Seq A exon
GTGGAATCTGTCCTGTTCCCAGAGCTGAAAGGATATAATCTGCTCCTTGGAACTGTTAACGCAGAAGAAAAACTTGTTTCTGATTTTTTGATTCAAACTTTCAAGGTATTTCAGAAAAATCAAGTTGGCCCCTGCAA
Seq C2 exon
ATATTTAAATGTCTACAAAAAGTATGTTGACTTATTGGATAACACGGCAGAGCAAAACATCGCTGCGTTCCTGAAAGAAAATCATGACATTGATGATTTTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'13-16,'13-14,15-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCCCTACCAAGAGATGA
R:
TTTCTTTCAGGAACGCAGCGA
Band lengths:
244-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)