RnoEX6004630 @ rn6
Exon Skipping
Gene
ENSRNOG00000050426 | AABR07005597.1
Description
NA
Coordinates
chr1:189837646-189844108:-
Coord C1 exon
chr1:189843929-189844108
Coord A exon
chr1:189839360-189839496
Coord C2 exon
chr1:189837646-189837751
Length
137 bp
Sequences
Splice sites
3' ss Seq
GAGTGACTTCTATTCTTTAGGTG
3' ss Score
6.75
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
GATGGAAACGATTTTAATGAGCCGTACCAAGAGATGGACTTCTTTATACCTCAGCTAATCACGATTAAACTTGAAGTGGATGATCCTGTTATTGTTTTCAACCCAACTTTTGATGACTGCTGGCAATTAATAAAGGAATCCTTCTTGGAAATTATTAAGAATTCTAATGGGATCCCCAAG
Seq A exon
GTGGAATCTATCCTCTTCCCAGATTTGAAAGGCTACAACATGATCCTTGGAACTGTTGATCCTGAAGAAAACCTTGTTGCAGATTTTTTGAATCAGACTTTAGAGGTATTTAACAAAAATCAAGTTGGACCTCACAA
Seq C2 exon
ATATTTAAATGTATACAAAAAGTATGACGACTTACTGGACAACACGGCTGAGCAAGACATCAGCACATTCTTGAATGATAAACATGACATTGACGACTTTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050426-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF115273=ARL2_Bind_BART=PU(28.8=50.0)
C2:
PF115273=ARL2_Bind_BART=FE(43.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAACGATTTTAATGAGCCGT
R:
TGTGCTGATGTCTTGCTCAGC
Band lengths:
245-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]