GgaEX6013261 @ galGal4
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:15031655-15032432:-
Coord C1 exon
chr14:15032253-15032432
Coord A exon
chr14:15031925-15032061
Coord C2 exon
chr14:15031655-15031760
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTTGTAATGATTCCCTTTAGGTA
3' ss Score
8.84
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GATGGGAGTGATTTTCCAGAACCCTATCAAGAAATGCAGTTCTTTTTACCTCAAATACTGATAGTCAAACTCAGTGTGGAAGAACCCAAGATCGTCTTTGAGCCACCTTTGAAAGGATGTTGGGATTTCATCAGTCTGTGCTTCAGGGAGATCCTACAAAGTGCTGAGGAACTTCCAAAG
Seq A exon
GTAGAAAGACTTCTCTTTCCACAACTAAAAAGAGATGACCTCACACTCAGTACAGTCAAACCAGACGAACCATTGTTTGCAGAGTATATAAACAGACTTGAAGAGATCTTTGAGAGCAACGTGCTTGGTCCACAGAG
Seq C2 exon
GTATTTAAACATGTACAGGAAATACAGCCATCTTTTGAACAACAATGCACAGCAAGATGTTACAGATTTCTTGAATGGAGGTCCATCCTTAGGAGCTTTAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGTGATTTTCCAGAACCC
R:
TCTGTAACATCTTGCTGTGCA
Band lengths:
244-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]