HsaEX6042646 @ hg19
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:21122947-21128638:-
Coord C1 exon
chr16:21128524-21128638
Coord A exon
chr16:21123314-21123419
Coord C2 exon
chr16:21122947-21123125
Length
106 bp
Sequences
Splice sites
3' ss Seq
CACACCCTTCAATATGGAAGATA
3' ss Score
0.24
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
Exon sequences
Seq C1 exon
AGCTGAAAGGATATAATCTGCTCCTTGGAACTGTTAACGCAGAAGAAAAACTTGTTTCTGATTTTTTGATTCAAACTTTCAAGGTATTTCAGAAAAATCAAGTTGGCCCCTGCAA
Seq A exon
ATATTTAAATGTCTACAAAAAGTATGTTGACTTATTGGATAACACGGCAGAGCAAAACATCGCTGCGTTCCTGAAAGAAAATCATGACATTGATGATTTTGTGACG
Seq C2 exon
AAGATCAATGCCATAAAGAAACGGAGAAATGAAATTGCATCCATGAACATCACCGTGCCTTTAGCCATGTTCTGCCTTGATGCTACGGCCCTAAATCATGATCTCTGTGAGCGAGCTCAAAATCTTAAAGACCATCTGATTCAATTCCAAGTGGATGTAAACCGAGACACCAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTTGGAACTGTTAACGC
R:
TCCACTTGGAATTGAATCAGATGGT
Band lengths:
251-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)