DreEX6096523 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39564951-39565548:+
Coord C1 exon
chr24:39564951-39565084
Coord A exon
chr24:39565168-39565264
Coord C2 exon
chr24:39565370-39565548
Length
97 bp
Sequences
Splice sites
3' ss Seq
ATCTTTGGTGTGTTGTATAGGTA
3' ss Score
8.03
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTGGAGTGTAAGCTTTTCCCAGAGATTGGAGAAACTCTAATGTTGCGCTCAGTGCAAGCTGATGAGATGCTGGTGAAAGACATCATCAACACAGCCAGAGAGACCTTTCAGAGGAACACCATTGGGCCACAGAG
Seq A exon
GTATCTGGAGGTATATAAGAAGTACACTCATTTACTGGATCATCAAGACATAGTGAACTTCCTTAAAACCAAACACTCACAGCAGGGCTTTACTAAG
Seq C2 exon
AAAATTACGGCTGTGCAGAACGTGTGGAAAGACATCGCATCACTCCATGCAACAGTTCCGCTTTCCCTGTTCTGTCTGGATGCAGTGAATCTGAACCAAGATCTGTGTGACAAGGCAGAGCATCTCATTGAACTTCTCACCACATTTGTGATGGAGGAGAACCGAGAACTCAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGCTGATGAGATGCTGG
R:
CTGCATCCAGACAGAACAGGG
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]