RnoEX6004631 @ rn6
Exon Skipping
Gene
ENSRNOG00000050426 | AABR07005597.1
Description
NA
Coordinates
chr1:189837284-189839496:-
Coord C1 exon
chr1:189839360-189839496
Coord A exon
chr1:189837646-189837751
Coord C2 exon
chr1:189837284-189837463
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTATTCCTCAACATGAAAGATA
3' ss Score
1.13
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGGAATCTATCCTCTTCCCAGATTTGAAAGGCTACAACATGATCCTTGGAACTGTTGATCCTGAAGAAAACCTTGTTGCAGATTTTTTGAATCAGACTTTAGAGGTATTTAACAAAAATCAAGTTGGACCTCACAA
Seq A exon
ATATTTAAATGTATACAAAAAGTATGACGACTTACTGGACAACACGGCTGAGCAAGACATCAGCACATTCTTGAATGATAAACATGACATTGACGACTTTGTGACG
Seq C2 exon
AGTATCAACAGCATCAAAAAGAGAAGAAATGAAATTGCATCCATGCACATCACCGTGCCCTTGGCCATGTTCTGTCTTGATGCCGTGTTACTAAATCATGACCTCTGTGAGCGAGCCCAAAATCTTAAAGACCGTTTGATTCAGTACCAAGTAGATGTAAACCGGGAAACCAATACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050426-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
PF115273=ARL2_Bind_BART=PU(28.8=50.0)
A:
PF115273=ARL2_Bind_BART=FE(43.8=100)
C2:
PF115273=ARL2_Bind_BART=PD(25.0=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTTCCCAGATTTGAAAGGCT
R:
ATTTTGGGCTCGCTCACAGAG
Band lengths:
249-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]