BtaEX6109016 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:19146163-19149560:-
Coord C1 exon
chr25:19149424-19149560
Coord A exon
chr25:19146489-19146594
Coord C2 exon
chr25:19146163-19146341
Length
106 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCTTCAATATGGAAGATA
3' ss Score
1.7
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
GTGGAATCTATCCTGTTCCCAGAGTTGAAAGGATATAATCTGATACTTGGAACTGTTAATGCTGATGAAAAACTGGTTTCTGACTTTGTGGATCAAACTTTCGAGGTATTTCAGAAAAATCAAGTTGGTCCCTGCAA
Seq A exon
ATACTTAAATGTATACAAAAAGTATGATGACTTATTGGATAACACGGCAGAACAAAACATCAGTGAATTCCTGAAAGAAAATCATGAAATCGAGGATTTTGTGATG
Seq C2 exon
AGGATCAATAGCATTAAAAAGCGGAGAAATGAAATTGCATCCATGCACATAACTGTGCCTTTGGCCATGTTCTGCCTTGACACCATGACCCTAAATTATGATCTCTGTGAACGAGCCCAAAATCTTAAAGACCGTTTGATTCAATTCCAAGTGGATGTAAACCGGGACACCAACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF115273=ARL2_Bind_BART=PU(28.4=50.0)
A:
PF115273=ARL2_Bind_BART=FE(43.2=100)
C2:
PF115273=ARL2_Bind_BART=PD(25.9=35.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTTCCCAGAGTTGAAAGGA
R:
TGGGCTCGTTCACAGAGATCA
Band lengths:
245-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]