MmuEX6013631 @ mm10
Exon Skipping
Gene
ENSMUSG00000052273 | Dnah3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:120071477-120073652:-
Coord C1 exon
chr7:120073538-120073652
Coord A exon
chr7:120071841-120071946
Coord C2 exon
chr7:120071477-120071655
Length
106 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCTTCAACACAAAAGATA
3' ss Score
0.08
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATTTGAAAGGCTACAACATGATTCTTGGAACTGTTAACCCTGAAGAAAGCCTTGTTTCAGATTTTTTGGATCAGACTTTAGAGGTATTTAAGAAAAATCAAGTTGGACCTTACAA
Seq A exon
ATACTTAAATGTATACAAGAAATATGATGACTTGCTGGACAACATGGCAGAGAAGGGCATCAGTGAATTCCTGAAAGAAAAACATGAAATTGAGGACTTTGTGACG
Seq C2 exon
AGCATCAATAGCATAAAAAAGAGGAAAAATGAAATTGCATCCATGCACATCACCGTGCCTTTGGCCATGTTCTGTCTTGATGCCGTGTTCCTAAATTATGACCTCTGTGAGCGAGCCCAAAATCTTAAAGACAATTTGATTCTGTATCAAGTGGATGTAAACCGGGAAACCAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-'16-19,'16-18,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF115273=ARL2_Bind_BART=PU(28.4=32.9)
A:
PF115273=ARL2_Bind_BART=FE(43.2=100)
C2:
PF115273=ARL2_Bind_BART=PD(25.9=35.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGAAGAAAGCCTTGTTTCA
R:
TGGTTTCCCGGTTTACATCCAC
Band lengths:
251-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types