BtaEX6109087 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N096]
Coordinates
chr25:19664266-19691330:+
Coord C1 exon
chr25:19664266-19664291
Coord A exon
chr25:19664645-19664733
Coord C2 exon
chr25:19691149-19691330
Length
89 bp
Sequences
Splice sites
3' ss Seq
GATCCAGTCTTCTACTACAGTGA
3' ss Score
3.75
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCATATATGGCTGTTACATCTAACAT
Seq A exon
TGACTATAGTTTCATTTTTGTCTTTCTTATGTGTTATGCCATTGCTTCAATATTCTTTGGCTTTATGGTTAGCACATTCTTCAATAAAG
Seq C2 exon
AAACTGGTGTGAACTGGAATAAGATTTGGACACCAGCCACCCTTGAGGATAACCTCACCTTTGGCCATATGATGGGAATGCTTGTAATTGATGCTTTCTTGTATGGCCTTGTGACCTGGTACATAGAAGCTGTCTTTCCAGGGCAATATGGCATGCCTCAACCATGGTACTTTTTTCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035915-'10-13,'10-11,11-13=AN
Average complexity
A_C3
Mappability confidence:
89%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(3.1=100)
A:
PF126982=ABC2_membrane_3=FE(11.6=100)
C2:
PF126982=ABC2_membrane_3=PD(15.4=65.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]