GgaEX1005382 @ galGal3
Exon Skipping
Gene
ENSGALG00000001967 | E1BVQ5_CHICK
Description
NA
Coordinates
chr14:14347661-14349170:-
Coord C1 exon
chr14:14349054-14349170
Coord A exon
chr14:14348374-14348494
Coord C2 exon
chr14:14347661-14347834
Length
121 bp
Sequences
Splice sites
3' ss Seq
TAACTGCTTTTTCTCTCCAGGTG
3' ss Score
11.87
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GAGTACATGCACATGATGGGCCTCAGCAACTGGCTGCACTGGAGCGCCTGGTTCCTCATGTTCTTCCTCTTCCTGCTGGTGTCTGTGTTCTTTGTCACCCTGCTCTTCTGTGTCAAG
Seq A exon
GTGAGTGAACAAGGAGCTGTGCTCACCAGCAGTGACCCCACGCTGGTGTTCACCTTCCTCGCCATCTTCTCCATCTCCACCATCTCCTTCAACTTCATGGTGAGCACCTTCTTCTCCAGAG
Seq C2 exon
CAAACGTTGCAGCTGCTGCTGGAGGCTTCCTGTACTTCTTCTCCTACATTCCCTACTTCTTCATCTCGCCTCGCTACGACCTGATGTCCCACAGCCAGAAGCTGGCATCCTGCCTCATCTCCAACGTGGCCATGGCCATGGGAGCACAGCTCATAGGCATGTTTGAAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-'7-8,'7-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.7=100)
A:
PF126982=ABC2_membrane_3=FE(13.4=100)
C2:
PF126982=ABC2_membrane_3=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGATGGGCCTCAGCAAC
R:
CATGGCCACGTTGGAGATGAG
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]