Special

ENSG00000167972 @ hg38

Biotype
protein_coding
Gene Symbol
ABCA3
Description
ATP binding cassette subfamily A member 3 [Source:HGNC Symbol;Acc:HGNC:33]
Coordinates
chr16:2275881-2340746:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
1.6
61.54
0
Alternative 3'ss
61
chr16:2289560-2289620
-
98.4
61.54
0
Alternative 3'ss
0
NA
-
2.46
66.61
0
Alternative 3'ss
4
chr16:2281506-2281509
-
97.54
66.61
0
Exon Skipping
188
chr16:2278943-2279130
-
98.66
39.32
0
Exon Skipping
174
chr16:2308450-2308623
-
96.7
40.46
0
Exon Skipping
182
chr16:2303969-2304150
-
72.28
100
0
Exon Skipping
130
chr16:2299403-2299532
-
81.54
97.44
0
Intron Retention
244
chr16:2317404-2317647
-
2.29
100
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000024130 Abca3 1-to-1
Mouse mm9 ENSMUSG00000024130 Abca3 1-to-1
Rat rn6 ENSRNOG00000050057 Abca3 1-to-1
Cow bosTau6 ENSBTAG00000014903 ABCA3 1-to-1
Chicken galGal4 ENSGALG00000001967 ABCA3 1-to-1
Chicken galGal3 ENSGALG00000001967 E1BVQ5_CHICK 1-to-1
Zebrafish danRer10 ENSDARG00000100524 abca3b 1-to-1
Fruitfly dm6 FBgn0031170 CG1718 1-to-5
Fruitfly dm6 FBgn0034493 CG8908 1-to-5
Fruitfly dm6 FBgn0036747 CG6052 1-to-5
Fruitfly dm6 FBgn0051213 CG31213 1-to-5
Fruitfly dm6 FBgn0261998 CG42816 1-to-5