BtaEX6109090 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N096]
Coordinates
chr25:19633709-19647691:+
Coord C1 exon
chr25:19633709-19633961
Coord A exon
chr25:19635846-19635973
Coord C2 exon
chr25:19647550-19647691
Length
128 bp
Sequences
Splice sites
3' ss Seq
ACAATTTTACTTCTCTGTAGTTC
3' ss Score
6.51
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGGAGGCAGTTCTTTAATTTAATATTGGAAGTCCTAACTGCATTGGCGTTTCCAATGATGCTTTTGCTCTTACGTGCTGTTATTCATATAACGGTTGCTGGACCTTACACTTTTACTTCTCAACCCATCAGTACTCTGCCTTCATTCCTCCAAAATGATGAAAGATGGGAATTGATTTATGTGCCTTCTAATATTGATGTGGTAAAAGAAATCACTGAGAATGTGAAGAGGAATCTAAACATCAGTATAAAAG
Seq A exon
TTCAAGGCTTTTCTTCAGAAATTGAGTTTGAGAAGTACATTAAGTATGACTATCGAGCTCATAAAGTGCTGGCTGCCATTGTTTTTGACTGTGACTTCAAAAATAGGCATGATCCATTGCCACTTCAG
Seq C2 exon
GTAAAATACCATCTGCGTTTTGCTGCTATACAGAGGACTATCATATGGCCAGATGAGACGGGCTGGAAAACAACCTTACTTTTCCCTAATCAGCCCTCTGTAGGACCCAGGAATCCAGGTCATCAGGATGGAGGAGGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035915-'3-7,'3-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.188
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(13.4=71.2)
A:
PF126982=ABC2_membrane_3=FE(12.0=100)
C2:
PF126982=ABC2_membrane_3=FE(13.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTAACTGCATTGGCGTT
R:
AGCAGCAAAACGCAGATGGTA
Band lengths:
251-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]