MmuEX0002958 @ mm10
Exon Skipping
Gene
ENSMUSG00000051900 | Abca16
Description
ATP-binding cassette, sub-family A (ABC1), member 16 [Source:MGI Symbol;Acc:MGI:2388711]
Coordinates
chr7:120409647-120431249:+
Coord C1 exon
chr7:120409647-120409766
Coord A exon
chr7:120427130-120427257
Coord C2 exon
chr7:120431108-120431249
Length
128 bp
Sequences
Splice sites
3' ss Seq
ACAATTTTGTCCCTCTGTAGTTC
3' ss Score
7.78
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGAGCGGTTGATCCGGGTGTTGAGGGTGTTGAGCGGAAGTGCTGCTCAGGAAAGACTGGAGCCCAGCAGCGATTCATTGGAGGAAACAGGGGCTGTGGAGGCGGTTGCTAGCTCTGAGTG
Seq A exon
TTCGAGGTTTTCCTTCAGAAGCAGAGTTTGAGGAGTACATTCTCTTTGATAATATGTCTCAGAAAGTACTGGCTGCCATTGTTTTTGACTGTGGCTTCAAAAACAAAAGTGATCCTCTGCCACTTCAG
Seq C2 exon
GTAAAATATCACTTGCGTTTTGTTGGTGCACAGAGGACCATCTGGTGGCCAGACAAGTTAGGCTGGAAAACGAGACTTCTCTTTCCTAATCATCCTTCTATACGACCCAGGAATCCAAATTATCTTGATGGAGGAAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051900_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NA
A:
PF126982=ABC2_membrane_3=FE(9.8=100)
C2:
PF126982=ABC2_membrane_3=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAGGGTGTTGAGCGGAAG
R:
CAGGACTTCCTCCATCAAGATAA
Band lengths:
244-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types