GgaEX1005378 @ galGal4
Exon Skipping
Gene
ENSGALG00000001967 | ABCA3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:HGNC:33]
Coordinates
chr14:13585721-13588229:-
Coord C1 exon
chr14:13587965-13588229
Coord A exon
chr14:13586007-13586134
Coord C2 exon
chr14:13585721-13585886
Length
128 bp
Sequences
Splice sites
3' ss Seq
ACAGCTTTCCTGCCCCACAGCCC
3' ss Score
9.12
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AAACGTCAGATTTTGGTCACCATCATAGAAATCTGCCTGCCACTGCTGTTTGCTGCCATCCTGATTGCACTGCGGCACCGGGTACACTCCGTCAGCCACCCCAATGCCACCATCTACCCATCCCTGTCCGTGGATGACCTGCCAGGCTTCTTCTACCGCCGGCACCCCGGCAACCCCTGGGAGCTGGCGTACGTCCCGTCCAACAGCAGCGCCGTGCAGAGCATCGCCAGAGCAGTGGAGAGAGCTCTGCCCATCAGCATCCGAG
Seq A exon
CCCAGGGCTTCGCCTCGGAGCGGGATTTCGAGGACTACGTCCGACGGGACAACCGCTCAGGCAGCGTGCTGGCTGCTGTCGTCTTCAAACACCACTTCAGCCACAGCACAGACCCGCTGCCCCTCCAG
Seq C2 exon
GTGGACTATGAGCTGCGCTTCAAGTACAGCCCCAGGAACGCGCCACGGAGTGAGCAGACGGGGCTGAACCCCAACCTGGACCGGGACTGGCACACCAGCTACCTCTTCCCACTCTTCCAGCTGCCCGGGCCCCGCGAGGCCAAGTTTGTGGATGGAGGAACGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-'3-6,'3-4,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.196
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(18.8=94.4)
A:
PF126982=ABC2_membrane_3=FE(9.4=100)
C2:
PF126982=ABC2_membrane_3=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACCTGCCAGGCTTCTTC
R:
GAGTGGGAAGAGGTAGCTGGT
Band lengths:
247-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]