MmuEX0002980 @ mm9
Exon Skipping
Gene
ENSMUSG00000024130 | Abca3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617]
Coordinates
chr17:24501638-24503878:+
Coord C1 exon
chr17:24501638-24501902
Coord A exon
chr17:24503031-24503158
Coord C2 exon
chr17:24503713-24503878
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTTTGGTGCTTTGTCCGCAGTGC
3' ss Score
9.54
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
Exon sequences
Seq C1 exon
AAACGGAAGGTTCTAGTGACAGTCCTGGAGCTCTTCCTGCCCCTGCTGTTTTCTGGGATCCTGATTTGGCTTCGCTTGAAGATCCAGTCGGAGAATGTGCCCAATGCCACTGTTTACCCGGACCAGTCCATCCAGGAGCTGCCCCTGTTTTTCTCATTCCCTCCACCTGGGGGGACCTGGGAGCTCGCCTATGTCCCTTCCCACAGCGATGCTGCCAGGACCATCACGGAGACGGTGAAAAGGGAATTCATGATCAAGATGAGAG
Seq A exon
TGCACGGCTTCTCCTCTGAGAAGGACTTCGAGGACTACATTCGCTATGACAACCACTCCTCCAGCGTGCTGGCAGCTGTGGTATTTGAGCACAGCTTCAACCACAGCCAGGACCCCCTGCCGCTGGCG
Seq C2 exon
GTGAAATACCACCTGCGCTTCAGTTACACACGAAGAAATTACATGTGGACCCAAACAGGAAATATTTTCCTAAAAGAGACTGAAGGCTGGCATACCACTTCACTTTTTCCACTTTTTCCAAGCCCCGGACCGCGGGAACCTTCATCACCTGATGGCGGTGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024130-'8-12,'8-11,9-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.232
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(19.2=96.6)
A:
PF126982=ABC2_membrane_3=FE(9.4=100)
C2:
PF126982=ABC2_membrane_3=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCTGTTTTCTGGGATCC
R:
TGTGTAACTGAAGCGCAGGTG
Band lengths:
255-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: