DreEX6015433 @ danRer10
Exon Skipping
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12449374-12472393:+
Coord C1 exon
chr3:12449374-12449629
Coord A exon
chr3:12458614-12458741
Coord C2 exon
chr3:12472228-12472393
Length
128 bp
Sequences
Splice sites
3' ss Seq
CATCTTGTTTTTTTATACAGTTC
3' ss Score
7.93
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AAGCGTCAGATCCTGGTCACACTGGTGGAAATCGCTCTGCCGCTGCTCTTCTCCGCCATCCTGATCGTCCTGCGGCAGAAAGTGTCTTTCACCAACTACCCGAATGCCACACACTACCAGAGCTTCCCTCTGAACGGCCTGCCGCCACTGCTGTGCTACCAGCAGCTGCAGCTGGCATACGTGCCCGCAAATGCCAGCGTGGTGCAGCAGATCGCACAGGACGTCCAGCAGAACCTGCAATCATGCATCAAAAACG
Seq A exon
TTCGTGGCTTTGAAACGGAGGAGCAGTTTGAGGAGTTCGTGAAAACTGATCCAGAGTCAGGCAAGATTTTGGCAGCCATTGTGTTTGAACATCCATTCAGTCACGATGATGAGCCGCTTCCTCTGCAG
Seq C2 exon
GTCAGCTATCATCTGCGCTTCACGTACAGCCCCAGAAATGCTCCAGCCCGAGAGAAGTCCGAGCTCAACCCTAACAATGATATGGACTGGCACACGCTCAGCCTGTTCCCGCTGTTCCAGATGCCCGGACCCAGAGAACAACACGACCCTCACGGGGGAACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.357
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(18.2=94.2)
A:
PF126982=ABC2_membrane_3=FE(9.5=100)
C2:
PF126982=ABC2_membrane_3=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACACACTACCAGAGCTTC
R:
GAGCGTGTGCCAGTCCATATC
Band lengths:
250-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]