RnoEX6046404 @ rn6
Exon Skipping
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13736672-13739242:+
Coord C1 exon
chr10:13736672-13736936
Coord A exon
chr10:13737926-13738053
Coord C2 exon
chr10:13739077-13739242
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTCTGGTGCTTTGTCCACAGTGC
3' ss Score
8.87
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
Exon sequences
Seq C1 exon
AAACGGAAGGTCCTAGTGACAGTCTTGGAGCTTTTCCTGCCCCTGCTGTTTTCTGGGATCCTGATTTGGCTTCGCTTGAAGATCCAGTCGGAGAATGTGCCCAATGCTACTGTTTACCCAGACCAGCACATCCAGGAGCTGCCCCTGTTTTTCTCATTCCCTCCACCTGGGGGGAGCTGGGAGCTCGCCTATGTCCCTTCCCACAGCGATGCTGCCAGGACCATCACAGAGGCAGTGAGAAGGGAATTCATGATCAAGATGAGAG
Seq A exon
TGCACGGCTTTTCCTCTGAGAAGGACTTCGAGGACTACGTTCGCTATGACAACCACTCCTCCAACGTGCTGGCAGCTGTGGTATTTGAGCACACCTTCAACCACAGCAAGGACCCCCTGCCATTGGCG
Seq C2 exon
GTGAGATACCACCTACGCTTCAGTTACACGCGAAGAAATTACATGTGGACCCAAACAGGAAATCTTTTCCTCAAAGAGACTGAAGGCTGGCACACCGCTTCTCTTTTCCCGCTTTTCCCAAGCCCAGGACCAAGGGAACCTTCATCACCTGATGGCGGTGAACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-'6-8,'6-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.179
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(19.2=96.6)
A:
PF126982=ABC2_membrane_3=FE(9.4=100)
C2:
PF126982=ABC2_membrane_3=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCTGTTTTCTGGGATCC
R:
TCGCGTGTAACTGAAGCGTAG
Band lengths:
258-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]