BtaEX6107996 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014903 | ABCA3
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 3 (ABCA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001113746]
Coordinates
chr25:1825839-1827989:-
Coord C1 exon
chr25:1827725-1827989
Coord A exon
chr25:1826661-1826788
Coord C2 exon
chr25:1825839-1826004
Length
128 bp
Sequences
Splice sites
3' ss Seq
GGCGCCCCTTCTCCCCATAGCTC
3' ss Score
10.16
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
AAGCGGAAGGTGCTGGTGACCCTCTTGGAGCTCTTTCTGCCCCTGCTGTTCTCTGGGATCCTGATCTGGCTCCGCCTGAAGATACAGTCAGAGAACGTGCCCAATGCCACCCTCTACCCCAGCCAGTCCATCCGAGAGCTGCCCCTCTTCTTCAGCTTCCCTCCCCCGGGGGCCACCTGGGAGCTGGCCTACATCCCATCCCAAAGTGAGGCGGTGCGCACAGTGGTGGAGAGCGTGCAGAGGGCGCTGGTGATCAACCTGCGAG
Seq A exon
CTCGCGGCTTCACCTCCGAGAAGGACTTCGAGGACTACATCAGATACGACAACCGCTCCACCAATGTGCTGGCCGCTCTGGTGTTTGAGCACACCTTCAACCACAGCCGGGACCCCCTGCCGCTGGCG
Seq C2 exon
GTGAAATACCACTTACGCTTCAGTTACACACGAAGAAACTACATGTGGACTCAGACAGGCTCCTTTTTCCTGAAAGAGACAGAGGGATGGCACACCACTTCCCTTTTTCCACTCTTCCCAAACCCAGGACCCAGGGAGCCCACGTCCCCTGATGGCGGAGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014903-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.232
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(18.8=94.4)
A:
PF126982=ABC2_membrane_3=FE(9.4=100)
C2:
PF126982=ABC2_membrane_3=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGTCAGAGAACGTGCCCA
R:
AGCCTGTCTGAGTCCACATGT
Band lengths:
244-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]