MmuALTA1036634-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000051900 | Abca16
Description
ATP-binding cassette, sub-family A (ABC1), member 16 [Source:MGI Symbol;Acc:MGI:2388711]
Coordinates
chr7:120421701-120423955:+
Coord C1 exon
chr7:120421701-120421795
Coord A exon
chr7:120423703-120423856
Coord C2 exon
chr7:120423857-120423955
Length
154 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
ATGTCTTTTCCCTCTTTTAGAAG
3' ss Score
10.92
Exon sequences
Seq C1 exon
ATTCTTAGAGTTGAGCACATAGTTTTTGTAGAAGGATGAATCAGTTGACAGTCAATCAATTAACAGTTCTCCTCTGGAAAAATTTTACATTAAAG
Seq A exon
AAGAGGCAGATCATTAGTACATCAGCAGAACTCTTGGCAGCTTTGCTGTTTGTAATAATGTTGTTGATATTCCGTGCACTTACTGATATGAATATTGCTGGACCGTATCATTTCACTGCTCAACCCATTGCTATCATGCCTTCTTTCATCAAAG
Seq C2 exon
ATGCCCAGGAGTGGGAATTGGTTTACATACCTTCTGAAATTGATGTGGTAAGAGAAATCATTGAGGATGTAAAGAGGAATCTCAACACCACTATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051900-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(18.4=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTTAGAGTTGAGCACATAGTTTT
R:
CTTTGATAGTGGTGTTGAGATTCCT
Band lengths:
194-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types