RnoALTA0001426-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000015783 | Abca16
Description
ATP-binding cassette, subfamily A (ABC1), member 16 [Source:RGD Symbol;Acc:1563534]
Coordinates
chr1:190200324-190202402:+
Coord C1 exon
chr1:190200324-190200383
Coord A exon
chr1:190202150-190202303
Coord C2 exon
chr1:190202304-190202402
Length
154 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TGTCTTTTTTCCTCTTTTAGAAG
3' ss Score
10.97
Exon sequences
Seq C1 exon
ATGAATCAGTTGTTACTCAATCAATTAACAGTTCTCCTCTGGAAAAATTTTACATTAAAG
Seq A exon
AAGAGGCAGGTCCTTAGTACAGTAATGGAAGTCTTGGCAGCATTGTTGTTTGTAATAATGTTGTTGATATTCCGTGCACTTACTGATATGAATATTGCTGGACCGTATCATTTCACTCCTCAACCCATTGCTACCATGCCTTCTTTCATCAAAG
Seq C2 exon
ATGCCCAGGAATGGGAATTGATTTACATACCTTCTGAAATTGATGTGGTAACAGAAATCATTGAGGATGTAAAGAGGAATCTCAACATCACTATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015783-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(18.5=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAATCAATTAACAGTTCTCCTCT
R:
AGTGATGTTGAGATTCCTCTTTACA
Band lengths:
138-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]