MmuEX1002867 @ mm10
Exon Skipping
Gene
ENSMUSG00000051900 | Abca16
Description
ATP-binding cassette, sub-family A (ABC1), member 16 [Source:MGI Symbol;Acc:MGI:2388711]
Coordinates
chr7:120409647-120431249:+
Coord C1 exon
chr7:120409647-120409766
Coord A exon
chr7:120421616-120421795
Coord C2 exon
chr7:120431108-120431249
Length
180 bp
Sequences
Splice sites
3' ss Seq
GTTTATTGCTCACATTTTAGGTA
3' ss Score
7.99
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
AGAGCGGTTGATCCGGGTGTTGAGGGTGTTGAGCGGAAGTGCTGCTCAGGAAAGACTGGAGCCCAGCAGCGATTCATTGGAGGAAACAGGGGCTGTGGAGGCGGTTGCTAGCTCTGAGTG
Seq A exon
GTAACTTAACATTGTAAAACCAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAACCTTTCATTCTTAGAGTTGAGCACATAGTTTTTGTAGAAGGATGAATCAGTTGACAGTCAATCAATTAACAGTTCTCCTCTGGAAAAATTTTACATTAAAG
Seq C2 exon
GTAAAATATCACTTGCGTTTTGTTGGTGCACAGAGGACCATCTGGTGGCCAGACAAGTTAGGCTGGAAAACGAGACTTCTCTTTCCTAATCATCCTTCTATACGACCCAGGAATCCAAATTATCTTGATGGAGGAAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051900_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF126982=ABC2_membrane_3=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAGGGTGTTGAGCGGAAG
R:
CAGGACTTCCTCCATCAAGATAA
Band lengths:
244-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types