RnoEX0004800 @ rn6
Exon Skipping
Gene
ENSRNOG00000015783 | Abca16
Description
ATP-binding cassette, subfamily A (ABC1), member 16 [Source:RGD Symbol;Acc:1563534]
Coordinates
chr1:190181015-190212183:+
Coord C1 exon
chr1:190181015-190181144
Coord A exon
chr1:190200171-190200383
Coord C2 exon
chr1:190212042-190212183
Length
213 bp
Sequences
Splice sites
3' ss Seq
GCTTATTGCTCACATTTTAGGTA
3' ss Score
7.79
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
CTCCGCTCCTGTCCCGGTGAGGCTGGGCAGTTGATCCGGTGTTGAGCGGAAGTGCAACTCAGGGAAGACACGAGCCAAGCCGTGATTCAGTGGAGGAAGCAGGGGCTGTGGAGGCGGTTGCTGCCGAGTG
Seq A exon
GTAACTTACCATTGTAAAAACAAGAAAAAAAAGGAAGGAAGGAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGAAAGAACCCTTTCATCCTTTAGAGTTGAGCACACAGTTTGGTAAAAGGATGAATCAGTTGTTACTCAATCAATTAACAGTTCTCCTCTGGAAAAATTTTACATTAAAG
Seq C2 exon
GTAAAATATCACTTGCGTTTTGTTGGTGCACAGAGGACCATATGGTGGCCAGACAAGATAGGCTGGAAAACGAGACTTCTCTTTCCAAATCATCCTTCTCTAAAACCCAGGAATCCAAATTATCTTGACGGAGGAAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015783_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF126982=ABC2_membrane_3=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGTCCCGGTGAGG
R:
CAGGACTTCCTCCGTCAAGAT
Band lengths:
268-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]