RnoEX0004801 @ rn6
Exon Skipping
Gene
ENSRNOG00000015783 | Abca16
Description
ATP-binding cassette, subfamily A (ABC1), member 16 [Source:RGD Symbol;Acc:1563534]
Coordinates
chr1:190181015-190212183:+
Coord C1 exon
chr1:190181015-190181144
Coord A exon
chr1:190202150-190202402
Coord C2 exon
chr1:190212042-190212183
Length
253 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTTTTCCTCTTTTAGAAG
3' ss Score
10.97
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
CTCCGCTCCTGTCCCGGTGAGGCTGGGCAGTTGATCCGGTGTTGAGCGGAAGTGCAACTCAGGGAAGACACGAGCCAAGCCGTGATTCAGTGGAGGAAGCAGGGGCTGTGGAGGCGGTTGCTGCCGAGTG
Seq A exon
AAGAGGCAGGTCCTTAGTACAGTAATGGAAGTCTTGGCAGCATTGTTGTTTGTAATAATGTTGTTGATATTCCGTGCACTTACTGATATGAATATTGCTGGACCGTATCATTTCACTCCTCAACCCATTGCTACCATGCCTTCTTTCATCAAAGATGCCCAGGAATGGGAATTGATTTACATACCTTCTGAAATTGATGTGGTAACAGAAATCATTGAGGATGTAAAGAGGAATCTCAACATCACTATAAAAG
Seq C2 exon
GTAAAATATCACTTGCGTTTTGTTGGTGCACAGAGGACCATATGGTGGCCAGACAAGATAGGCTGGAAAACGAGACTTCTCTTTCCAAATCATCCTTCTCTAAAACCCAGGAATCCAAATTATCTTGACGGAGGAAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015783_MULTIEX1-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NA
A:
PF126982=ABC2_membrane_3=PU(18.5=94.1)
C2:
PF126982=ABC2_membrane_3=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGTCCCGGTGAGG
R:
CAGGACTTCCTCCGTCAAGAT
Band lengths:
268-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]