BtaEX6109092 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N096]
Coordinates
chr25:19633318-19635973:+
Coord C1 exon
chr25:19633318-19633381
Coord A exon
chr25:19633709-19633961
Coord C2 exon
chr25:19635846-19635973
Length
253 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTGTTCCTCTTCTAGAGG
3' ss Score
10.22
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
AAGAATGAATTTATTGACACTCAACCAGTTTGCAGTGCTTCTCTGGAAAAATTTCACCTTGAAG
Seq A exon
AGGAGGCAGTTCTTTAATTTAATATTGGAAGTCCTAACTGCATTGGCGTTTCCAATGATGCTTTTGCTCTTACGTGCTGTTATTCATATAACGGTTGCTGGACCTTACACTTTTACTTCTCAACCCATCAGTACTCTGCCTTCATTCCTCCAAAATGATGAAAGATGGGAATTGATTTATGTGCCTTCTAATATTGATGTGGTAAAAGAAATCACTGAGAATGTGAAGAGGAATCTAAACATCAGTATAAAAG
Seq C2 exon
TTCAAGGCTTTTCTTCAGAAATTGAGTTTGAGAAGTACATTAAGTATGACTATCGAGCTCATAAAGTGCTGGCTGCCATTGTTTTTGACTGTGACTTCAAAAATAGGCATGATCCATTGCCACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035915-'1-6,'1-2,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(13.4=71.2)
C2:
PF126982=ABC2_membrane_3=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATGAATTTATTGACACTCAACCA
R:
AAGTGGCAATGGATCATGCCT
Band lengths:
188-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]