MmuEX6013757 @ mm9
Exon Skipping
Gene
ENSMUSG00000051900 | Abca16
Description
ATP-binding cassette, sub-family A (ABC1), member 16 [Source:MGI Symbol;Acc:MGI:2388711]
Coordinates
chr7:127565215-127574763:+
Coord C1 exon
chr7:127565215-127565309
Coord A exon
chr7:127567217-127567469
Coord C2 exon
chr7:127574622-127574763
Length
253 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTTTCCCTCTTTTAGAAG
3' ss Score
10.92
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
Exon sequences
Seq C1 exon
ATTCTTAGAGTTGAGCACATAGTTTTTGTAGAAGGATGAATCAGTTGACAGTCAATCAATTAACAGTTCTCCTCTGGAAAAATTTTACATTAAAG
Seq A exon
AAGAGGCAGATCATTAGTACATCAGCAGAACTCTTGGCAGCTTTGCTGTTTGTAATAATGTTGTTGATATTCCGTGCACTTACTGATATGAATATTGCTGGACCGTATCATTTCACTGCTCAACCCATTGCTATCATGCCTTCTTTCATCAAAGATGCCCAGGAGTGGGAATTGGTTTACATACCTTCTGAAATTGATGTGGTAAGAGAAATCATTGAGGATGTAAAGAGGAATCTCAACACCACTATCAAAG
Seq C2 exon
GTAAAATATCACTTGCGTTTTGTTGGTGCACAGAGGACCATCTGGTGGCCAGACAAGTTAGGCTGGAAAACGAGACTTCTCTTTCCTAATCATCCTTCTATACGACCCAGGAATCCAAATTATCTTGATGGAGGAAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051900-'1-3,'1-1,2-3=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(18.4=92.9)
C2:
PF126982=ABC2_membrane_3=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTAGAGTTGAGCACATAGTTTTT
R:
CAGGACTTCCTCCATCAAGATAA
Band lengths:
236-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: