HsaEX1009900 @ hg38
Exon Skipping
Gene
ENSG00000189149 | CRYM-AS1
Description
CRYM antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:34405]
Coordinates
chr16:21300849-21339038:+
Coord C1 exon
chr16:21300849-21301335
Coord A exon
chr16:21316862-21317126
Coord C2 exon
chr16:21338921-21339038
Length
265 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTCTTCTTCTTCTAGAGG
3' ss Score
10.46
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
GAGAATTGGGGTGGGGCGCGCCAAGAGGAGCAAGCATTATAGAACGTGGGGAGCATGAGAAATACACGGAGGTGGAAACGCCGGAGTGGCTGGCGGGTAAAGGCAGCGGGCGCAGATGAAGCGGGCTGGGCGTCCCACGCGCAGAACCGTCCCGGACAGAAGCCGCAGGGCTGCGCTGGCTGGAAAAAGGAACGCGAGTACAGCGCGCGTGGCGCGGGGTCTGCTCCAGGACGGAATCTTTTGGGTGGCCCGCATGAGGGGTTTGCAGGACCCCGGGCCTTTGGGAAGTTATCTGCTAAACTCCAGTAGACCCTGAGGAGCAGCGGCTCATGAATCTTCTTAAACTTCTGTCATCAGCGGCTGGGCCAGCTGAAGGTGACCATGGCACACGAGGGAGAGAGAAGCCCGCGAGAGGCGGAGAAATGTGGGGTCGTCCAGGAGGGTCGACAAGGCAAAGAACCTGAAGACGACCCAAAAGGGTACCTAG
Seq A exon
AGGCGGCGATGTATTGCTTTAGTTGTGGAAATGGTCCTCACATTTCTGTTTAGTGCTGCGCTTTTGGCAACACGCTCTGTTATTACTATAAATAAGAACGGACCTTTCGATTTTGCTGCTCAGCCTGTCGATGAAGTGCCTTTCTACATCACAGCTTCCTTAATTTCTCCTTCTCCTTTGGAATTGGCTTACGTGCCTTCCAGAAGTACTGTGGTTCAGGGTATTATTGAAAGAGTGAAAATGGATTTAAACCCTCAAATGAAAG
Seq C2 exon
GTTGAACCTGCACCAGTCATCCAAAGCAGTGACCCAACGCTTATCTTTATCTTTTTGCTGTTTTATGCCATCGCCACAATATGCTTCAGCTTTATGGTTAGCACTTTCTTCAGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189149_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGCCTTTGGGAAGTTATC
R:
AAGCATATTGTGGCGATGGCA
Band lengths:
301-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains