MmuEX6013734 @ mm10
Exon Skipping
Gene
ENSMUSG00000054746 | Abca15
Description
ATP-binding cassette, sub-family A (ABC1), member 15 [Source:MGI Symbol;Acc:MGI:2388709]
Coordinates
chr7:120332150-120335255:+
Coord C1 exon
chr7:120332150-120332230
Coord A exon
chr7:120332586-120332850
Coord C2 exon
chr7:120335128-120335255
Length
265 bp
Sequences
Splice sites
3' ss Seq
TATTATTGTTGTTCTTTTAGAGG
3' ss Score
8.11
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AGTTGAACTCTGATCAAAAGAATGGCTTCATGGGAGTCAAGAAAACTTTTGCTTCTTCTGTGGAAGAACTTTACTTTAAAG
Seq A exon
AGGCGGAAGTTTGGGACTTTAGTTTCTGAGATAGTCCTGGTGCTTTTGCTCAGCATTGTGCTTTTGACAACACGCCACCTTCTTAGTATAAAGAAGATTGAAGCTCTGTATTTTCCTGACCAACCTATCAGCACTGTTCCTTCCTTCTTCCGAGCCTCTGTCACCAGTTTTTATCCTTGGGAGTTGGCTTATGTGCCTTCCAACATCATGGTGGTAGAGAATATTGTCAAAAATGTGAAAAATGATTTAAACCTTCATATGAAAG
Seq C2 exon
TTATAGGGTTTCCTTCAGAAAGTGATTTTGAAGATTATGCTAGGTCAACTGTCAACTCTAGAAATATTCTGGCTGCTATTGTGTTTGGCCACAACTTTGCAAACAGCAGTGATCCTCTGCCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054746-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(19.3=95.5)
C2:
PF126982=ABC2_membrane_3=FE(9.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTCTGATCAAAAGAATGGCT
R:
CTTCTTTGGCAGAGGATCACTG
Band lengths:
206-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types