HsaEX1009899 @ hg38
Exon Skipping
Gene
ENSG00000189149 | CRYM-AS1
Description
CRYM antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:34405]
Coordinates
chr16:21300849-21339038:+
Coord C1 exon
chr16:21300849-21301335
Coord A exon
chr16:21315884-21315970
Coord C2 exon
chr16:21338921-21339038
Length
87 bp
Sequences
Splice sites
3' ss Seq
AATATTTACTCCCTCCATAGAGT
3' ss Score
7.78
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAGAATTGGGGTGGGGCGCGCCAAGAGGAGCAAGCATTATAGAACGTGGGGAGCATGAGAAATACACGGAGGTGGAAACGCCGGAGTGGCTGGCGGGTAAAGGCAGCGGGCGCAGATGAAGCGGGCTGGGCGTCCCACGCGCAGAACCGTCCCGGACAGAAGCCGCAGGGCTGCGCTGGCTGGAAAAAGGAACGCGAGTACAGCGCGCGTGGCGCGGGGTCTGCTCCAGGACGGAATCTTTTGGGTGGCCCGCATGAGGGGTTTGCAGGACCCCGGGCCTTTGGGAAGTTATCTGCTAAACTCCAGTAGACCCTGAGGAGCAGCGGCTCATGAATCTTCTTAAACTTCTGTCATCAGCGGCTGGGCCAGCTGAAGGTGACCATGGCACACGAGGGAGAGAGAAGCCCGCGAGAGGCGGAGAAATGTGGGGTCGTCCAGGAGGGTCGACAAGGCAAAGAACCTGAAGACGACCCAAAAGGGTACCTAG
Seq A exon
AGTTGAACTTCCTCTCTTTTTAGAAGAATGGATTTCTCGGAGTCTGAAAAATTTATGGTTCTTCTCTGGAAGAATTTTATTTTAAAG
Seq C2 exon
GTTGAACCTGCACCAGTCATCCAAAGCAGTGACCCAACGCTTATCTTTATCTTTTTGCTGTTTTATGCCATCGCCACAATATGCTTCAGCTTTATGGTTAGCACTTTCTTCAGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189149_MULTIEX1-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCTGTCATCAGCGGCTG
R:
TGCTTTGGATGACTGGTGCAG
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains