MmuEX6013735 @ mm9
Exon Skipping
Gene
ENSMUSG00000054746 | Abca15
Description
ATP-binding cassette, sub-family A (ABC1), member 15 [Source:MGI Symbol;Acc:MGI:2388709]
Coordinates
chr7:127472198-127476364:+
Coord C1 exon
chr7:127472198-127472338
Coord A exon
chr7:127475664-127475744
Coord C2 exon
chr7:127476100-127476364
Length
81 bp
Sequences
Splice sites
3' ss Seq
AACATTTCTAATTCCTCCAGAGT
3' ss Score
6.71
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGAAGAAAGAGCACTACCCTACAGGACGGTTAGCTAAGGCCTTGCTTGTGTGCAGGAAGAGCTTCCAGAACTGGGCCATATGATGCTCTTCGGTGGATAAGGCGCTAAGTGGTTTAAGGTTGCTTAACTAGAGCAGTAGTG
Seq A exon
AGTTGAACTCTGATCAAAAGAATGGCTTCATGGGAGTCAAGAAAACTTTTGCTTCTTCTGTGGAAGAACTTTACTTTAAAG
Seq C2 exon
AGGCGGAAGTTTGGGACTTTAGTTTCTGAGATAGTCCTGGTGCTTTTGCTCAGCATTGTGCTTTTGACAACACGCCACCTTCTTAGTATAAAGAAGATTGAAGCTCTGTATTTTCCTGACCAACCTATCAGCACTGTTCCTTCCTTCTTCCGAGCCTCTGTCACCAGTTTTTATCCTTGGGAGTTGGCTTATGTGCCTTCCAACATCATGGTGGTAGAGAATATTGTCAAAAATGTGAAAAATGATTTAAACCTTCATATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054746-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(19.3=95.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACGGTTAGCTAAGGCCTT
R:
CTGAGCAAAAGCACCAGGACT
Band lengths:
172-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: