RnoEX6004681 @ rn6
Exon Skipping
Gene
ENSRNOG00000027505 | Abca15
Description
ATP-binding cassette, subfamily A (ABC1), member 15 [Source:RGD Symbol;Acc:1305981]
Coordinates
chr1:190072420-190077606:+
Coord C1 exon
chr1:190072420-190072559
Coord A exon
chr1:190076898-190076978
Coord C2 exon
chr1:190077342-190077606
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACCACTTTTAATTCCTCCAGAGT
3' ss Score
7.77
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGAAGAAAGAGCGCTGCCCTGCAAGACGGTTAGCTAAGGCCTTGCTTGTGTGCAGGAAGAGCTTCCAGAACTGGGCAGTCTGATGCTCTCCAGTGGATAAGGCGCTAGTGGTTTAAGGTTGCGAAATTGGAGCAGTAGTG
Seq A exon
AGTTGAACTCTGTTCAAAACAATGGCTTCACCAGCATCAAAAAAACTTTTGCTCCTTCTGTGGAAGAACTTTACTTTAAAG
Seq C2 exon
AGGCGGAAGTTTGGGGCTTTAGTTACTGAGATAATCCTGATGCTTGCGTTCAGCATTGTGCTTTTGACAACACGCCACCTTCTTAGCATAAACAAGATGGAGTCCCTGCATTTTCCTGACCAACCTGTCGGTGCTGTTCCTTTCTTCTTCCGAGTCTCTGCCAACAGTTCTCGTCCTTGGGAGCTGGCTTATGTGCCTTCCAACATCACGGTGGTACACAATATTGTCGAAAATGTGAAAAAGGATTTAAACTTCCCTATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027505-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(19.3=95.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGCTTGTGTGCAGGAAGA
R:
GGCGTGTTGTCAAAAGCACAA
Band lengths:
177-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]