RnoEX0004802 @ rn6
Exon Skipping
Gene
ENSRNOG00000015783 | Abca16
Description
ATP-binding cassette, subfamily A (ABC1), member 16 [Source:RGD Symbol;Acc:1563534]
Coordinates
chr1:190181015-190212183:+
Coord C1 exon
chr1:190181015-190181144
Coord A exon
chr1:190205908-190206035
Coord C2 exon
chr1:190212042-190212183
Length
128 bp
Sequences
Splice sites
3' ss Seq
ACAGTTTTGTCTCTCTGTAGTTC
3' ss Score
8.5
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTCCGCTCCTGTCCCGGTGAGGCTGGGCAGTTGATCCGGTGTTGAGCGGAAGTGCAACTCAGGGAAGACACGAGCCAAGCCGTGATTCAGTGGAGGAAGCAGGGGCTGTGGAGGCGGTTGCTGCCGAGTG
Seq A exon
TTCGAGGGTTTCCTTCAGAAGTTGAGTTTGAGGAGTACATTCTGTTCGATTATACGTCTCAGAAAGTACTGGCTGCCATTGTTTTTGACTGTGATTTCAAAAACAAAACTGATCCTCTGCCACTTCAG
Seq C2 exon
GTAAAATATCACTTGCGTTTTGTTGGTGCACAGAGGACCATATGGTGGCCAGACAAGATAGGCTGGAAAACGAGACTTCTCTTTCCAAATCATCCTTCTCTAAAACCCAGGAATCCAAATTATCTTGACGGAGGAAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015783_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NA
A:
PF126982=ABC2_membrane_3=FE(9.7=100)
C2:
PF126982=ABC2_membrane_3=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTTGATCCGGTGTTGAG
R:
CAGGACTTCCTCCGTCAAGAT
Band lengths:
247-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]