BtaEX6109108 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MHK9]
Coordinates
chr25:19447118-19469080:+
Coord C1 exon
chr25:19447118-19447268
Coord A exon
chr25:19466797-19466895
Coord C2 exon
chr25:19469066-19469080
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCTCCTTCTCCTTCTCCTAGGTT
3' ss Score
10.59
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GTGTGGGATACCACTTAATTATTGTAAAGGATCATCACTGTGATGTTAAAGAAATCTCCGAACTGATTAAATATCACATACCAGAAGCCAGATTGGAGAACAATGTTGCAGCTGAATTATCGTTTGTCCTACCCAAGGAGTACACAGACAG
Seq A exon
GTTTAAAGCTCTATTTACTGAAATGGAAGACAGACAGGAAGAGCTGGGTATTGCTAGCTTTGGTATCTCCATCACTACCATGGAAGAGGTTTTCATTAG
Seq C2 exon
TATTTCTGAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006717-'20-20,'20-19,21-20=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]