MmuEX6013705 @ mm10
Exon Skipping
Gene
ENSMUSG00000062017 | Abca14
Description
ATP-binding cassette, sub-family A (ABC1), member 14 [Source:MGI Symbol;Acc:MGI:2388708]
Coordinates
chr7:120251160-120253459:+
Coord C1 exon
chr7:120251160-120251310
Coord A exon
chr7:120252185-120252283
Coord C2 exon
chr7:120253297-120253459
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTATCTCCATTACCTTTCAGGTT
3' ss Score
9.99
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTGTGGGGTATCACCTAGTCATCGTGAAGACTCCTGACAGCAATGATGAAAAAATCTTCCAGCTGATTAAGAATTACATACCGACTGCCAAGATGGAGACCAATGTTGCAGCTGAGCTGTCCTTTATCTTGCCCAAGGAGCACACACACAG
Seq A exon
GTTTGCAGAGCTTTTCACAGACCTAGAAGAAAAACAAGAAGAGCTAGGAATCTCTGGCTTTGGTGTCTCCATGACTACCATGGATGAGGTTTTCTTCAA
Seq C2 exon
GGTCAGTAATCTGGAAGATTTGAAATTGAACACTGAGATTGCTCCATCAGCTTCCATAGTGAGCCAAAGCTCAAATGAAGACAACCAGAACATGAATGTGCCCAGAAATTTTGAGCGACCAGGTTACTCAAGAAGACACTTGGATTCTTCATTCAATGCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062017-'24-22,'24-21,25-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.218
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCAATGTTGCAGCTGA
R:
GGTCGCTCAAAATTTCTGGGC
Band lengths:
177-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types