RnoEX6004653 @ rn6
Exon Skipping
Gene
ENSRNOG00000043296 | Abca14
Description
ATP-binding cassette, subfamily A (ABC1), member 14 [Source:RGD Symbol;Acc:1561491]
Coordinates
chr1:190016705-190019297:+
Coord C1 exon
chr1:190016705-190016855
Coord A exon
chr1:190017896-190017994
Coord C2 exon
chr1:190019135-190019297
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTATCTCCACTGTCTTTCAGGTT
3' ss Score
10.62
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GAGTGGGGTACCACCTAGTCATAGTGAAGACTCCTGACAGTGACGATGGAAAAATCTCCCAGCTGATTAAGAACTACATACCAACTGCCGAGATGGAGACCAATGTTGCAGCTGAGCTGTCATTCATCCTGCCCAAGGAGCACACACACAG
Seq A exon
GTTTGCAGAACTTTTCACAGACCTAGAAGAAAGACAAGAAGAGCTCGGCATCTCTGGCTTTGGTGTCTCCATGACTACCATGGACGAGGTTTTCTTCAA
Seq C2 exon
GGTCAGTAATCTGGCAGATTTGAAGTTGAACACTGAGATTGCTCAATCAGCTTCTACAGTGAACCCAAGCACAAGTGAAAACAACGAGAATATGAATGTGCCCAGAAATTTTGAACGATCAGGTTACTCAGGAAGATATTCTGATTCTTCATTCAATGCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043296-'26-25,'26-24,27-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.327
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCAATGTTGCAGCTGA
R:
TCGTTCAAAATTTCTGGGCACA
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]