GgaEX1005374 @ galGal4
Exon Skipping
Gene
ENSGALG00000001967 | ABCA3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:HGNC:33]
Coordinates
chr14:13575810-13577516:-
Coord C1 exon
chr14:13577366-13577516
Coord A exon
chr14:13576671-13576769
Coord C2 exon
chr14:13575810-13576002
Length
99 bp
Sequences
Splice sites
3' ss Seq
CACCTCGCTTGTCCTTGCAGGTT
3' ss Score
11.2
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGGCGGGGTACCACATGGTGATGGTGAAGGAGCCGTACTGTAACCTGGGGGAGATCTCCCGCCTCATCTGTCAGTACGTGCCCAACGCCACCATGGAGAGCAATGCCGGGGCAGAGCTGTCCTTCATCCTGCCCAAAGAGAGCACTCACAG
Seq A exon
GTTTGAGGCCCTATTCACAGAGCTGGAGCTGAAGCGGGAGGAGCTGGGCATCGCCAGCTATGGGGCCTCAGTCACCACCATGGAGGAAGTCTTCCTGAG
Seq C2 exon
GGTTGGGAAGCTGGTGGACTCCAGCATGGACATCCAGGCCATCCAGCTGCCTGCTCTGCAGTACCAGCACGAACGGCGCTCCAACGACTGGGCCATGGACGACTCCAGCAGCCTGAGTGGGATGACAGACATGACAGATGACAGCGGGGCACTCATTACAGAGGACTGCTCCAGCATCAAGCTCAACACCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-'20-25,'20-23,21-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAAAGAGAGCACTCACAG
R:
CCCGCTGTCATCTGTCATGTC
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]