BtaEX0001689 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014903 | ABCA3
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 3 (ABCA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001113746]
Coordinates
chr25:1806776-1810813:-
Coord C1 exon
chr25:1810663-1810813
Coord A exon
chr25:1808276-1808374
Coord C2 exon
chr25:1806776-1806962
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTTTTTTTTTTCAGGTT
3' ss Score
13.28
5' ss Seq
CCGGTCAGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GCGCAGGCTACCACATGACGCTGGTGAAGGAGCCCCACTGCAACCCCGAGGGCATCTCCCGGCTGGTCCAGCACCACGTCCCCAACGCCACCCTGGAGAGCAGCGCCGGGGCAGAGCTGTCGTTCATTCTTCCCAAGGAGAGCACGCACAG
Seq A exon
GTTTGAAAGTCTTTTTGCTAAACTGGAGAAGAAGCAGAAGGAGCTGGGCATTGCCAGCTTCGGGGCCTCCGTCACCACCATGGAGGAGGTCTTCCTCCG
Seq C2 exon
GGTTGGCAAGCTGGTGGACAGCAGCATGGATATCCAGGCCATCCAGCTCCCTGCCCTGCAGTACCAGCACGAGAGGCGGGCCAGCGACTGGGCCGTGGATGGCCACCTGTGTGGGACCATGGACCCGACCGACGGGGTCGGTGCGCTGATTGAGGAGGAGTGCACTGCCGTTAGGCTCAACACCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014903-'18-23,'18-22,19-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGACGCTGGTGAAGGAG
R:
TATCCATGCTGCTGTCCACCA
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development