RnoEX6046395 @ rn6
Exon Skipping
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13759592-13767632:+
Coord C1 exon
chr10:13759592-13759742
Coord A exon
chr10:13764161-13764259
Coord C2 exon
chr10:13767446-13767632
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTGCTCTGGTCTCCTTTCAGGTT
3' ss Score
12.39
5' ss Seq
TCGGTCAGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
GAGCTGGCTACCACATGACACTGGTGAAAGAACCACACTGCAATCCTGAAGGTATCTCTCAGCTGGTGCACCACCATGTCCCCAATGCCATGCTGGAGAGCCATGCTGGGGCCGAGTTGTCCTTTATTCTTCCCAAGGAAAGCACACACAG
Seq A exon
GTTTGAAAGTCTGTTTGCTAAACTGGAAAAGAAGCAGAAGGAACTGGGCATTGCAAGCTTCGGGGCCTCTGTCACCACCATGGAGGAGGTCTTCCTTCG
Seq C2 exon
GGTTGGTAAGCTGGTGGACACCAGCATGGACATTCAAGCCATCCAGCTTCCTGCTCTGCAGTACCAGCATGAGAGGCGGGCAAGCGACTGGGCTCTGGATAGTAACTTGTGTGGGGTGATGGACCCAACGAACGGCATTGGAGCCCTCATAGAGGAAGAAGAAGTTTTGGTCAAGCTCAACACCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-'23-29,'23-26,24-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGCTACCACATGACAC
R:
GTGTCCACCAGCTTACCAACC
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]