DreEX6015422 @ danRer10
Exon Skipping
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12506986-12520340:+
Coord C1 exon
chr3:12506986-12507158
Coord A exon
chr3:12514184-12514282
Coord C2 exon
chr3:12520142-12520340
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGTGTGTTTTTGCAGGTT
3' ss Score
11.25
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GTGGTGATGTTGGACGAGCCCACCTCAGGAATGGACCCCTCAGCCCGTCGGGCCACCTGGGACCTGCTGCAGGGCGAGAAACGTGGCCGCACCATCCTGCTTACCACACACTTCATGGACGAGGCCGACCTGCTGGGAGATCGCATCGCCATCATGGCCAGCGGAGAGCTCCA
Seq A exon
GTTTGAGCTGCTGTTTGCTGAGCTGGAGATGAATCGAGATGAGTTGGGCATCGCCAGTTATGGGGCGTCTGTTACCACCATGGAGGAGGTTTTTCTCAG
Seq C2 exon
GGTCGGCAAGCTGGTGGACTCGAGTCTGGATATTCAGGCGATTCAGCTCCCGGCTCTGCAGTACCAGCACGAGCGGCGCTCTCACGACTGGACCATGGACGACTCCAGCAGCATCAGCGGCATGACAGACGTGACCGATTTCACCGACAGCTGCACAATGATCTCAGAGGACGGATCCAACATCAAGCTCAACACCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524-'16-20,'16-18,20-20=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(5.5=11.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACACTTCATGGACGAGG
R:
TCCATGGTCCAGTCGTGAGAG
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]